Hg_chrom5_TN10mRNA_10812
Organism: Heterodera glycines Gene Locus: chr5:10066499-10069158 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.331 | 0.979 | 0.697 | 1.291 | 1.209 | 0.481 | 2.189 | 0.973 | 0.956 | 1.224 | 1.981 | 0.655 | 0.777 | 1.443 | 1.203 | 0.718 | 0.918 | 1.295 | 0.396 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10184
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.732
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
14-55
|
0.991
|
— | — |
0.000
|
— | — |
0.454
|
0.355
|
0.048
|
0.567
|
0.180
|
0.090
|
0.108
|
0.115
|
0.320
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000883
|
1.000
|
5.000
|
Hsc_gene_23718.t1;Hsc_gene_23733.t1;Hsc_gene_26394.t1;Hsc_gene_7696.t1;Hsc_gene_8524.t1
|
Hsc_gene_23718.t1
|
— | — |
CAD2152165.1 unnamed protein product [Meloidogyne enterolobii]
|
MBP5245601
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-184;264-297
|
2.000
|
1-49;185-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
33854.360
|
8.961
|
12.500
|
32.660
|
9.764
|
55.892
|
44.108
|
19.529
|
13.131
|
47.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
288.007
|
220.349
|
133.007
|
95.466
|
30.611
|
13.308
|
60.273
|
40.441
|
101.614
|
961.272
|
592.847
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.958
|
-1.344
|
-0.370
|
-1.673
|
-1.188
|
2.190
|
1.503
|
0.717
|
— | — | — | — | — |
No JSON data available for plots.