Hg_chrom5_TN10mRNA_10820
Organism: Heterodera glycines Gene Locus: chr5:10138291-10140346 Feature type: polypeptideProtein Sequence
Length: 215
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.244 | 1.514 | 0.507 | 1.925 | 0.543 | 1.431 | 0.831 | 0.698 | 0.827 | 1.194 | 0.705 | 2.189 | 0.517 | 0.447 | 0.285 | 1.86 | 0.915 | 0.705 | 2.504 | 1.231 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10192
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_18173;Hsc_gene_1656
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-25
|
0.963
|
1.000
|
0.000
|
0.000
|
0.187
|
0.247
|
0.048
|
0.555
|
0.292
|
0.059
|
0.082
|
0.102
|
0.281
|
0.781
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002256
|
2.000
|
2.000
|
Hsc_gene_1656.t2;Hsc_gene_18173.t1
|
Hsc_gene_18173.t1
|
— |
Q16937.1 Ancylostoma secreted protein [Ancylostoma caninum]
|
AAK60209.1 vap-1 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.822|GO:0110165_0.815|GO:0008150_0.720|GO:0016020_0.524
|
IPR001283+34-185_66-84_114-127_142-158_171-184+|IPR002413+25-41_66-84_112-127_141-160+|IPR014044+29-184_35-176+|IPR035940+10-191_22-215+
|
SM00198+29-184+
|
PF00188+35-176+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+34-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
23231.350
|
7.046
|
1.500
|
13.488
|
10.698
|
44.186
|
55.814
|
7.442
|
6.047
|
58.140
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
7674.435
|
493.211
|
11186.871
|
2395.763
|
356.372
|
287.500
|
15.400
|
7184.553
|
33434.543
|
279.867
|
14489.014
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.278
|
2.142
|
-2.118
|
-2.782
|
— |
-4.215
|
4.547
|
-8.730
|
6.771
|
-3.631
|
— | — | — |