Hg_chrom5_TN10mRNA_10825
Organism: Heterodera glycines Gene Locus: chr5:10193952-10195102 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.527 | 0.978 | 1.059 | 0.67 | 1.241 | 1.328 | 0.347 | 2.265 | 1.726 | 1.531 | 1.03 | 1.333 | 1.348 | 0.498 | 1.453 | 1.156 | 0.796 | 0.834 | 0.747 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10197
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.253
|
0.071
|
0.382
|
0.143
|
0.084
|
0.069
|
0.118
|
0.048
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000235
|
9.000
|
1.000
|
Hsc_gene_20530.t1
|
— | — | — |
XP_055902602.1 zinc finger BED domain-containing protein 4-like [Eupeodes corollae]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.888|GO:0005622_0.880|GO:0110165_0.880|GO:0003674_0.837|GO:0043226_0.831|GO:0016020_0.817|GO:0043229_0.807|GO:0005488_0.801|GO:0005737_0.775|GO:0043227_0.767|GO:0005515_0.766|GO:0043231_0.755|GO:0005634_0.675|GO:0042802_0.673|GO:0031974_0.602|GO:0043233_0.602|GO:0031981_0.599|GO:0070013_0.599|GO:0005654_0.577
|
IPR012337+8-274+|IPR052035+6-298+
|
— | — | — |
PTHR46481+6-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
35937.330
|
8.041
|
9.000
|
31.715
|
11.650
|
54.045
|
45.955
|
18.447
|
13.269
|
40.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
4.738
|
0.078
|
0.578
|
0.808
|
0.794
|
1.505
|
0.000
|
1.374
|
19.864
|
3.904
|
10.744
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-4.742
|
— |
-4.473
|
— | — | — | — | — |
No JSON data available for plots.