Hg_chrom5_TN10mRNA_10827
Organism: Heterodera glycines Gene Locus: chr5:10219899-10221242 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.339 | 0.677 | 1.236 | 3.683 | 1.618 | 0.996 | 0.578 | 0.971 | 1.51 | 0.787 | 1.471 | 3.998 | 1.618 | 0.747 | 0.793 | 0.555 | 0.318 | 0.588 | 2.24 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10199
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.627
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.467
|
0.229
|
0.019
|
0.635
|
0.053
|
0.142
|
0.097
|
0.003
|
0.127
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010057
|
1.000
|
1.000
|
Hsc_gene_18122.t1
|
Hsc_gene_18122.t1
|
— | — |
KAI1718977.1 LIM domain-containing protein, variant [Ditylenchus destructor]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0009987_0.881|GO:0003674_0.833|GO:0005488_0.832|GO:0005515_0.823|GO:0016043_0.741|GO:0071840_0.741|GO:0006996_0.698|GO:0044085_0.688|GO:0022607_0.686|GO:0007010_0.676|GO:0030029_0.674|GO:0007015_0.670|GO:0030036_0.670|GO:0051017_0.670|GO:0061572_0.670|GO:0097435_0.670|GO:0097159_0.666|GO:0003676_0.663|GO:0044877_0.659|GO:0003723_0.656|GO:0003729_0.650|GO:0003779_0.650|GO:0008092_0.650|GO:0051015_0.650
|
IPR001781+10-71_12-62+
|
— |
PF00412+12-62+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
12113.240
|
5.196
|
-2.000
|
32.039
|
11.650
|
44.660
|
55.340
|
15.534
|
16.505
|
41.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
1880.023
|
184.376
|
179.617
|
280.470
|
196.108
|
46.959
|
41.183
|
248.761
|
713.696
|
7248.277
|
4447.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.268
|
0.468
|
0.752
|
-0.547
|
-2.049
|
— |
2.302
|
-2.453
|
-3.430
|
— |
-4.735
|
— | — |
No JSON data available for plots.