Hg_chrom5_TN10mRNA_10831
Organism: Heterodera glycines Gene Locus: chr5:10248536-10251394 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 1.323 | 0.817 | 0.929 | 1.048 | 0.614 | 1.069 | 1.198 | 0.931 | 1.295 | 0.68 | 1.233 | 1.747 | 0.749 | 0.611 | 1.326 | 0.883 | 1.225 | 0.921 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10203
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.733
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.572
|
0.255
|
0.005
|
0.760
|
0.231
|
0.210
|
0.255
|
0.069
|
0.070
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010059
|
1.000
|
1.000
|
Hsc_gene_18132.t1
|
Hsc_gene_18132.t1
|
— |
P97328.1 Ketohexokinase [Mus musculus]
|
KAH7703949.1 ketohexokinase isoform 1 [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0009987_0.857|GO:0003674_0.856|GO:0008152_0.787|GO:0044237_0.760|GO:0044238_0.758|GO:0003824_0.745|GO:0005575_0.703|GO:0110165_0.703|GO:0006793_0.694|GO:0006796_0.694|GO:0016740_0.685|GO:0005975_0.684|GO:0016310_0.674|GO:0046835_0.670|GO:0016772_0.658|GO:0016301_0.654|GO:0004454_0.650|GO:0016773_0.650|GO:0019200_0.650|GO:0016020_0.603|GO:0005622_0.597|GO:0005737_0.577|GO:0043226_0.547|GO:0043227_0.530
|
IPR011611+223-323+|IPR029056+1-322_2-326+|IPR052562+3-247+
|
— |
PF00294+223-323+pfkB_family_carbohydrate_kinase
|
— |
PTHR42774+3-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
36114.970
|
5.031
|
-7.000
|
20.659
|
11.677
|
43.413
|
56.587
|
9.880
|
10.778
|
56.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
477.373
|
45.350
|
603.918
|
52.613
|
127.105
|
294.961
|
973.960
|
528.396
|
38.645
|
1074.658
|
630.652
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.509
|
— |
-3.412
|
1.240
|
1.229
|
1.732
|
0.742
|
1.021
|
-4.906
|
— | — | — | — |
No JSON data available for plots.