Hg_chrom5_TN10mRNA_10833
Organism: Heterodera glycines Gene Locus: chr5:10284340-10286056 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.855 | 0.401 | 1.521 | 0.613 | 0.754 | 0.525 | 0.919 | 2.614 | 1.391 | 0.78 | 1.298 | 1.532 | 0.283 | 0.975 | 1.05 | 0.844 | 1.504 | 1.98 | 1.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10205
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RPRR,RKKLKHLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.103
|
0.067
|
0.017
|
0.065
|
0.472
|
0.103
|
0.137
|
0.015
|
0.806
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004208
|
1.000
|
2.000
|
Hsc_gene_18142.t4;Hsc_gene_8520.t3
|
Hsc_gene_18142.t4;Hsc_gene_18143.t1;Hsc_gene_18143.t2
|
— | — |
KAI1718207.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+29-224+|IPR019424+29-202+|IPR047130+25-242+
|
SM01381+29-224+
|
PF10320+29-202+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+25-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
31167.150
|
8.968
|
13.500
|
17.647
|
14.706
|
36.765
|
63.235
|
11.765
|
5.882
|
44.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
98.426
|
0.303
|
3.699
|
1.478
|
0.830
|
0.257
|
0.603
|
2.190
|
1.542
|
425.946
|
244.059
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.373
|
— | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.