Hg_chrom5_TN10mRNA_10853
Organism: Heterodera glycines Gene Locus: chr5:10423690-10427982 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.812 | 1.004 | 0.336 | 1.082 | 0.666 | 0.85 | 1.786 | 1.082 | 1.185 | 1.033 | 2.101 | 1.443 | 1.249 | 0.729 | 0.649 | 0.958 | 1.033 | 1.998 | 0.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10223
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.731
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRWTGDTAFIPMKKFRKF
|
— | — |
2-23
|
0.904
|
— | — |
0.000
|
— | — |
0.670
|
0.521
|
0.017
|
0.266
|
0.068
|
0.114
|
0.160
|
0.130
|
0.244
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000544
|
6.000
|
1.000
|
Hsc_gene_1542.t1
|
— | — |
Q12955.3 Ankyrin-3 [Homo sapiens]
|
KIH42226.1 ankyrin repeat protein, partial [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005515|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.859|GO:0005575_0.858|GO:0110165_0.850|GO:0009987_0.783|GO:0005622_0.732|GO:0003674_0.729|GO:0005737_0.717|GO:0016020_0.714|GO:0043226_0.637|GO:0071944_0.601|GO:0051179_0.575|GO:0051234_0.570|GO:0006810_0.569|GO:0043229_0.568|GO:0005886_0.519|GO:0008152_0.514
|
IPR002110+114-143_162-190_168-231_191-220+|IPR005615+59-141+|IPR014042+232-259+|IPR014709+63-124_260-287+|IPR036770+125-189_130-231_190-228+|IPR052391+129-231+
|
SM00248+114-143_162-190_191-220+
|
PF03917+59-141+Eukaryotic_glutathione_synthase,_ATP_binding_domain|PF12796+168-231+Ankyrin_repeats_(3_copies)
|
— |
PTHR24133+129-231+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
4rly_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
34583.500
|
6.573
|
0.500
|
25.974
|
12.013
|
46.753
|
53.247
|
13.961
|
12.013
|
51.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
28.212
|
14.101
|
45.777
|
11.773
|
4.065
|
7.085
|
2.638
|
30.689
|
1.028
|
79.109
|
45.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.468
|
— |
-1.848
|
-1.570
|
— | — |
2.011
|
-3.399
|
-6.025
|
— |
-3.927
|
— | — |
No JSON data available for plots.