Hg_chrom5_TN10mRNA_10859
Organism: Heterodera glycines Gene Locus: chr5:10482335-10518947 Feature type: polypeptideProtein Sequence
Length: 2,075
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.311 | 0.953 | 0.955 | 0.316 | 1.293 | 1.854 | 0.78 | 2.41 | 0.921 | 1.14 | 0.518 | 1.049 | 0.616 | 1.019 | 1.161 | 0.702 | 1.082 | 1.132 | 0.519 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10229
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|cell_membrane
|
— |
RRRK,RKAAAPIRITCRYLKKEKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.359
|
0.054
|
0.552
|
0.095
|
0.385
|
0.167
|
0.027
|
0.636
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004211
|
1.000
|
2.000
|
Hsc_gene_1540.t1;Hsc_gene_1540.t2
|
Hsc_gene_1540.t1;Hsc_gene_1540.t2;Hsc_gene_1542.t1;Hsc_gene_1544.t1
|
— |
G5E8K5.1 Ankyrin-3 [Mus musculus]
|
KAI1715432.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0008150_0.959|GO:0009987_0.914|GO:0005575_0.891|GO:0110165_0.881|GO:0003674_0.801|GO:0016020_0.793|GO:0071944_0.767|GO:0051179_0.762|GO:0006810_0.743|GO:0051234_0.743|GO:0005622_0.732|GO:0005488_0.689|GO:0005886_0.675|GO:0043226_0.665|GO:0005737_0.657|GO:0005515_0.651|GO:0051641_0.619|GO:0033036_0.600|GO:0070727_0.600|GO:0008104_0.598|GO:0032502_0.598|GO:0048856_0.598|GO:0016043_0.597|GO:0071840_0.597|GO:0032501_0.595|GO:1990778_0.581|GO:0051668_0.580|GO:0072657_0.578|GO:0072659_0.578|GO:0065007_0.568|GO:0050789_0.564|GO:0043229_0.563|GO:0050794_0.542|GO:0008152_0.526|GO:0050896_0.514
|
IPR000488+1518-1611_1525-1607+|IPR000906+976-1080_978-1135_980-1077_1137-1307+|IPR002110+53-82_60-149_86-115_86-118_119-148_119-151_152-181_152-184_152-209_185-208_185-213_214-243_219-308_247-276_247-279_280-309_280-312_313-342_313-345_313-365_346-388_346-391_373-455_392-421_392-424_425-454_425-457_458-487_458-490_459-488_491-520_491-523_492-521_524-553_524-556_525-584_557-586_557-589_590-619_590-622_591-620_623-652_623-655_650-719_656-685_656-688_657-672_689-718_689-721_722-751_722-754_755-784_755-787_771-785_775-829_788-817_788-820+|IPR011029+1515-1612_1517-1609+|IPR036770+23-333_55-364_342-424_373-475_425-490_461-847_491-875+|IPR040745+1333-1467+|IPR051165+636-1583+
|
SM00218+976-1080+|SM00248+53-82_86-115_119-148_152-181_185-213_214-243_247-276_280-309_313-342_346-388_392-421_425-454_458-487_491-520_524-553_557-586_590-619_623-652_656-685_689-718_722-751_755-784_788-817+
|
PF00023+459-488_492-521_591-620_722-754+Ankyrin_repeat|PF00531+1525-1607+Death_domain|PF00791+980-1077+ZU5_domain|PF12796+60-149_152-209_219-308_313-365_373-455_525-584_650-719+Ankyrin_repeats_(3_copies)|PF13857+775-829+Ankyrin_repeats_(many_copies)|PF17809+1333-1467+UPA_domain
|
G3DSA:1.25.40.20:FF:000001+333-462+Ankyrin-2_isoform_2|G3DSA:1.25.40.20:FF:000003+463-881+Ankyrin,_isoform_B|G3DSA:1.25.40.20:FF:000095+36-332+Ankyrin_2,_isoform_J|G3DSA:2.60.220.30:FF:000002+974-1134+Ankyrin-3_isoform_2
|
PTHR24123+636-1583+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63;780-941;1217-1277;1611-2075
|
3.000
|
64-779;942-1216;1278-1610
|
4rlv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
227307.310
|
5.953
|
-31.000
|
26.940
|
9.157
|
49.783
|
50.217
|
13.928
|
13.012
|
52.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6427.233
|
12222.687
|
6101.032
|
3186.887
|
1991.394
|
3068.572
|
1652.643
|
3577.986
|
5580.882
|
12008.033
|
9253.540
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.231
|
-2.077
|
-0.829
|
-0.710
|
0.638
|
-0.884
|
— |
-0.974
|
— | — | — | — | — |
No JSON data available for plots.