Hg_chrom5_TN10mRNA_10861
Organism: Heterodera glycines Gene Locus: chr5:10551190-10554603 Feature type: polypeptideProtein Sequence
Length: 310
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.2 | 0.411 | 0.222 | 1.237 | 0.827 | 0.422 | 0.968 | 1.577 | 1.439 | 2.248 | 1.898 | 1.075 | 0.558 | 1.514 | 1.521 | 0.793 | 0.489 | 1.489 | 0.19 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10861
|
30-pJ2
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
chloroplast
|
RRTFKLSLNRIKKKQM,KKAITFINNKEKDNKK,RKKLARSNSKAIRKQKS,RRVMEELLPKEVLKKKSS
|
46-73
|
0.998
|
15-65
|
0.998
|
1-26
|
0.597
|
0.657
|
0.000
|
0.000
|
0.498
|
0.204
|
0.312
|
0.481
|
0.166
|
0.112
|
0.141
|
0.084
|
0.570
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002259
|
3.000
|
1.000
|
Hsc_gene_1536.t1
|
— | — | — |
KAI3413405.1 hypothetical protein GPALN_010899, partial [Globodera pallida]
|
MBI2651472
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
52-96
|
2.000
|
1-51;97-310
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
36041.360
|
11.206
|
42.000
|
33.871
|
8.387
|
57.742
|
42.258
|
24.194
|
9.677
|
37.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
200.158
|
3.083
|
5.823
|
91.901
|
13.491
|
2.012
|
4.352
|
3.728
|
310.882
|
595.883
|
473.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.769
|
4.086
|
-2.802
|
-2.733
|
— | — | — | — | — |
-5.323
|
— | — |