Hg_chrom5_TN10mRNA_10863
Organism: Heterodera glycines Gene Locus: chr5:10571823-10582539 Feature type: polypeptideProtein Sequence
Length: 779
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.925 | 1.004 | 0.354 | 1.669 | 0.79 | 0.55 | 1.476 | 1.027 | 1.145 | 2.178 | 2.039 | 1.355 | 0.543 | 1.1 | 1.284 | 0.568 | 0.545 | 0.889 | 0.34 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10233
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10863
|
30-Not_Clustered
|
0.685
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
RKKLARSNSKSMRKSKS,KKLSKSAKKQSASKSEKK,RRVMEELLPKEVLKKKSF,RKSKSSDQRDLQKKLNKK,KKLGSSSTSISETKRMIK,RRRWRRGKSEKKLSKSAKK,KKALIKAKKTHEQLHRRQR,KKAKAELSLFKKSLKRTKS,KNHKKAKAELSLFKKSLKR
|
63-84
|
0.970
|
2-42
|
0.965
|
1-27
|
— |
0.996
|
— |
0.000
|
0.355
|
0.132
|
0.041
|
0.528
|
0.086
|
0.216
|
0.263
|
0.011
|
0.305
|
0.350
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002259
|
3.000
|
1.000
|
Hsc_gene_1536.t1
|
— | — | — |
KAI3413404.1 hypothetical protein GPALN_010899 [Globodera pallida]
|
HKJ10437
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
44-116;516-602;727-779
|
3.000
|
1-43;117-515;603-726
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
89711.990
|
10.121
|
44.500
|
38.254
|
10.141
|
57.766
|
42.234
|
22.721
|
15.533
|
40.436
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1967.860
|
10.262
|
583.001
|
1027.268
|
195.219
|
15.194
|
20.066
|
22.652
|
8314.147
|
1671.151
|
4518.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.600
|
6.510
|
0.926
|
-2.427
|
-3.670
|
— | — | — |
2.203
|
-2.848
|
-2.769
|
— | — |