Hg_chrom5_TN10mRNA_10865
Organism: Heterodera glycines Gene Locus: chr5:10590459-10602690 Feature type: polypeptideProtein Sequence
Length: 774
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.322 | 1.292 | 0.267 | 1.593 | 0.928 | 0.631 | 0.646 | 1.034 | 1.048 | 2.212 | 1.216 | 1.041 | 0.348 | 1.371 | 1.144 | 0.593 | 0.685 | 0.398 | 0.798 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10865
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
mitochondria
|
LRKSKTAVKVAK,KKTTMQKIKQKFKQK,KRRDNEGKKRRRKRAY,KKIKLNKKEDDYKLQKR,KKGIYKEQRNLYKKKHG,RRVYEEMMPEKVEKEAKK,KKEAEEKVDKVTKAKRSVK,KKKSTNVEPKVEPDPKKLK,KKSTNVEPKVEPDPKKLKE,KKKHGTSKRRDNEGKKRRR,KKHGTSKRRDNEGKKRRRK,RKRAYSTDDDDDICKDKQK
|
36-60
|
0.987
|
— | — |
1-27
|
— |
0.583
|
— |
0.000
|
0.398
|
0.150
|
0.016
|
0.550
|
0.073
|
0.262
|
0.353
|
0.017
|
0.414
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010066
|
1.000
|
1.000
|
Hsc_gene_1535.t1
|
Hsc_gene_1535.t1;Hsc_gene_3802.t1
|
— | — |
KAI3413404.1 hypothetical protein GPALN_010899 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-108;478-570;676-774
|
3.000
|
1-35;109-477;571-675
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
89176.200
|
10.093
|
41.000
|
39.276
|
8.269
|
60.207
|
39.793
|
22.610
|
16.667
|
42.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2555.659
|
10.184
|
772.678
|
560.078
|
65.331
|
6.957
|
4.493
|
24.932
|
10905.069
|
2460.460
|
6079.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.017
|
5.644
|
-0.357
|
-3.131
|
-3.215
|
— | — |
-2.326
|
— |
-4.122
|
-4.747
|
— | — |