Hg_chrom5_TN10mRNA_10869
Organism: Heterodera glycines Gene Locus: chr5:10619698-10621855 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 0.423 | 0.441 | 1.045 | 0.707 | 1.321 | 2.273 | 0.455 | 0.539 | 0.86 | 0.735 | 2.317 | 0.421 | 3.089 | 1.175 | 0.823 | 0.497 | 0.367 | 0.0 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10239
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10869
|
29-J3_J4_Female_Male
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
RRRMRKMMKSRMMTKKRV.
|
6-45
|
0.947
|
— | — | — | — |
0.001
|
— | — |
0.051
|
0.069
|
0.004
|
0.114
|
0.352
|
0.160
|
0.301
|
0.007
|
0.599
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010067
|
1.000
|
1.000
|
Hsc_gene_3805.t1
|
Hsc_gene_3805.t1
|
— |
Q21184.3 Putative cuticle collagen 155 [Caenorhabditis elegans]
|
AAC47437.1 COL-1 [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.943|GO:0005575_0.941|GO:0110165_0.941|GO:0032501_0.894|GO:0032502_0.870|GO:0048856_0.870|GO:0007275_0.852|GO:0071944_0.801|GO:0030312_0.717|GO:0031012_0.682|GO:0062023_0.682|GO:0042303_0.680|GO:0018996_0.670|GO:0040002_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0060102_0.540
|
IPR002486+12-64_17-59+|IPR008160+160-215_229-285+|IPR050632+20-294+
|
SM01088+12-64+
|
PF01391+160-215_229-285+Collagen_triple_helix_repeat_(20_copies)|PF01484+17-59+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+20-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-330
|
1.000
|
1-109
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
33728.490
|
9.466
|
14.500
|
18.182
|
6.061
|
33.939
|
66.061
|
11.515
|
6.667
|
61.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
4017.913
|
5.240
|
1385.811
|
43.359
|
12708.492
|
25023.902
|
3834.365
|
874.522
|
27.084
|
1104.673
|
642.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.825
|
2.917
|
-4.891
|
8.163
|
0.992
|
-2.698
|
-4.944
|
2.273
|
-5.483
|
— |
3.748
|
— | — |
No JSON data available for plots.