Hg_chrom5_TN10mRNA_10874
Organism: Heterodera glycines Gene Locus: chr5:10651086-10652204 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.934 | 0.934 | 1.299 | 0.616 | 1.042 | 1.145 | 0.531 | 1.562 | 0.496 | 1.327 | 1.285 | 1.838 | 1.86 | 0.601 | 2.369 | 0.957 | 0.512 | 0.609 | 1.374 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10244
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRKR,SRRK
|
82-112
|
0.997
|
68-91
|
0.965
|
— | — |
0.000
|
— | — |
0.788
|
0.112
|
0.090
|
0.317
|
0.028
|
0.060
|
0.050
|
0.061
|
0.036
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000146
|
12.000
|
1.000
|
Hsc_gene_23909.t1
|
Hsc_gene_865.t1;Hsc_gene_9622.t1
|
— | — |
KAI1728452.1 hypothetical protein DdX_00635 [Ditylenchus destructor]
|
MCP5142335
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39
|
1.000
|
40-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
26206.030
|
10.801
|
18.500
|
36.607
|
11.607
|
54.911
|
45.089
|
23.214
|
13.393
|
42.411
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
291.895
|
155.606
|
357.994
|
287.625
|
214.595
|
197.573
|
156.202
|
339.956
|
492.243
|
266.775
|
363.404
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.971
|
0.749
|
-0.206
|
-0.454
|
— |
-0.328
|
0.675
|
-0.977
|
— | — | — | — | — |
No JSON data available for plots.