Hg_chrom5_TN10mRNA_10876
Organism: Heterodera glycines Gene Locus: chr5:10685932-10688601 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.472 | 1.776 | 1.085 | 0.658 | 1.75 | 1.102 | 0.341 | 1.193 | 1.485 | 0.645 | 2.242 | 1.965 | 1.392 | 0.551 | 0.682 | 0.784 | 0.939 | 0.615 | 0.734 | 0.983 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10246
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10876
|
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KVKK,KKKFGINAKTKIKRYSK,RLAQAKATKTKKLSDKEKKR
|
— | — | — | — | — |
0.836
|
0.343
|
0.000
|
— |
0.947
|
0.073
|
0.032
|
0.179
|
0.016
|
0.013
|
0.006
|
0.029
|
0.042
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001338
|
1.000
|
4.000
|
Hsc_gene_2981.t1;Hsc_gene_2981.t2;Hsc_gene_3809.t1;Hsc_gene_685.t1
|
Hsc_gene_2981.t1;Hsc_gene_2981.t2;Hsc_gene_3809.t1
|
— | — |
KAI3408412.1 hypothetical protein GPALN_010338 [Globodera pallida]
|
WP_179031978
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
51-259
|
2.000
|
1-50;260-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
49425.240
|
8.727
|
12.000
|
36.993
|
11.695
|
60.143
|
39.857
|
20.525
|
16.468
|
40.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
275.814
|
0.765
|
2.760
|
47.868
|
13.847
|
8.347
|
2.444
|
2.861
|
9.675
|
1169.847
|
672.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.831
|
4.220
|
-1.813
|
— |
-1.756
|
— | — |
-7.078
|
— |
-6.127
|
— | — |