Hg_chrom5_TN10mRNA_10885
Organism: Heterodera glycines Gene Locus: chr5:10737220-10742415 Feature type: polypeptideProtein Sequence
Length: 678
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.784 | 1.126 | 0.305 | 1.352 | 1.891 | 0.246 | 0.885 | 1.475 | 0.658 | 1.676 | 1.909 | 0.778 | 0.709 | 0.933 | 1.433 | 1.04 | 0.76 | 0.227 | 0.477 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10255
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10885
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RRRR,PSRKRAR,KKDLRTDQSIYEESPSRKR,KKRAIETIDEFVKFIRRKT,KRAIETIDEFVKFIRRKTS,SRKRARPKKEKIEEKRPNGKPKM
|
— | — | — | — |
1-23
|
— |
0.995
|
— |
0.000
|
0.891
|
0.101
|
0.017
|
0.362
|
0.016
|
0.009
|
0.014
|
0.011
|
0.058
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010069
|
1.000
|
1.000
|
Hsc_gene_3821.t1
|
— | — | — |
KAI3410361.1 hypothetical protein GPALN_004462 [Globodera pallida]
|
No
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR016197+540-597+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-536
|
2.000
|
1-35;537-678
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
77326.870
|
9.195
|
15.000
|
31.711
|
6.490
|
63.127
|
36.873
|
17.404
|
14.307
|
47.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
567.548
|
7.161
|
120.195
|
150.619
|
22.754
|
0.979
|
2.426
|
5.523
|
1912.882
|
932.237
|
1352.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.837
|
4.253
|
0.435
|
-2.757
|
-4.509
|
— | — | — | — |
-3.502
|
-5.108
|
— | — |