Hg_chrom5_TN10mRNA_10886
Organism: Heterodera glycines Gene Locus: chr5:10746652-10748705 Feature type: polypeptideProtein Sequence
Length: 263
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.503 | 0.346 | 1.442 | 0.317 | 1.072 | 1.358 | 0.57 | 1.267 | 1.079 | 1.21 | 1.789 | 0.845 | 0.512 | 0.155 | 1.575 | 1.496 | 0.864 | 0.292 | 1.789 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10256
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_3822
|
— |
Hg_chrom5_TN10mRNA_10886
|
9-Migratory
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.437
|
0.158
|
0.026
|
0.280
|
0.333
|
0.115
|
0.251
|
0.026
|
0.439
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010070
|
1.000
|
1.000
|
Hsc_gene_3822.t1
|
Hsc_gene_3822.t1
|
— | — |
AAM74954.1 pectate lyase 2 [Heterodera glycines];AYC07650.1 pectate lyase [Heterodera glycines]
|
CAE6497726
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.938|GO:0003674_0.851|GO:0008152_0.748|GO:0044238_0.740|GO:0043170_0.736|GO:0003824_0.703|GO:0009056_0.693|GO:0009057_0.685|GO:0005975_0.680|GO:0005976_0.680|GO:0000272_0.674|GO:0016052_0.674|GO:0010393_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.655|GO:0016835_0.650|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+24-231+|IPR011050+32-222+|IPR012334+36-261+
|
— |
PF03211+24-231+Pectate_lyase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
28061.200
|
9.265
|
14.500
|
13.688
|
10.646
|
44.487
|
55.513
|
9.886
|
3.802
|
57.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
12725.481
|
9.382
|
575.126
|
155.246
|
35.441
|
8.562
|
13.809
|
184.300
|
65788.216
|
5964.619
|
31603.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.713
|
3.915
|
-1.779
|
-2.168
|
-2.033
|
— |
4.329
|
-3.596
|
3.371
|
-8.596
|
-6.844
|
-3.865
|
— |