Hg_chrom5_TN10mRNA_10889
Organism: Heterodera glycines Gene Locus: chr5:10786729-10787706 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.266 | 0.54 | 1.707 | 1.238 | 1.142 | 0.648 | 1.238 | 1.76 | 0.535 | 1.35 | 1.747 | 1.238 | 0.762 | 1.819 | 0.849 | 1.055 | 0.675 | 0.381 | 0.728 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10259
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
AIKKEKRKYKKNPK,RRCDPRSYRTTRKIAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.859
|
0.080
|
0.010
|
0.464
|
0.017
|
0.012
|
0.017
|
0.003
|
0.033
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010072
|
1.000
|
1.000
|
Hsc_gene_3825.t1
|
Hsc_gene_10512.t1;Hsc_gene_14463.t1;Hsc_gene_3857.t1;Hsc_gene_3857.t2
|
— |
Q17370.1 Nuclear hormone receptor family member nhr-47 [Caenorhabditis elegans]
|
KAI1708335.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.804|GO:0005575_0.697|GO:0110165_0.675|GO:0005622_0.629|GO:0003674_0.627|GO:0009987_0.608|GO:0065007_0.605|GO:0050789_0.603|GO:0005488_0.593|GO:0043226_0.563|GO:0050794_0.560|GO:0043229_0.550|GO:0097159_0.520
|
IPR001628+28-98_28-102_30-96_31-47_47-62_79-87_87-95+|IPR013088+25-105+|IPR049636+31-97+|IPR050274+24-167+
|
SM00399+28-98+
|
PF00105+30-96+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+24-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17
|
1.000
|
18-202
|
4iqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
23227.810
|
9.950
|
17.500
|
30.693
|
9.901
|
52.970
|
47.030
|
20.297
|
10.396
|
45.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
41.727
|
1.229
|
5.916
|
4.242
|
2.841
|
0.985
|
1.220
|
0.840
|
8.967
|
169.355
|
100.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.029
|
1.652
|
— | — | — | — | — | — | — | — |
-5.709
|
— | — |
No JSON data available for plots.