Hg_chrom5_TN10mRNA_10891
Organism: Heterodera glycines Gene Locus: chr5:10799173-10800664 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 0.828 | 0.946 | 0.472 | 1.142 | 0.702 | 0.391 | 1.233 | 2.131 | 1.37 | 1.453 | 2.417 | 1.598 | 0.632 | 1.342 | 1.057 | 0.808 | 0.581 | 1.054 | 0.483 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10261
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RKLTSDTEMKDIFERIKKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.488
|
0.031
|
0.284
|
0.274
|
0.129
|
0.068
|
0.141
|
0.064
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
Hsc_gene_2839.t1;Hsc_gene_2840.t1
|
— |
Q80WQ9.1 Zinc finger BED domain-containing protein 4 [Mus musculus]
|
KIH53449.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.847|GO:0110165_0.836|GO:0005622_0.796|GO:0016020_0.768|GO:0043226_0.754|GO:0043229_0.735|GO:0005737_0.729|GO:0043227_0.688|GO:0043231_0.684|GO:0003674_0.678|GO:0005488_0.598|GO:0005634_0.554|GO:0008150_0.542|GO:0031974_0.507|GO:0043233_0.504|GO:0070013_0.504|GO:0031981_0.501
|
IPR012337+72-340+|IPR052035+7-345+
|
— | — | — |
PTHR46481+7-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-365
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
42341.690
|
10.114
|
19.500
|
30.685
|
11.233
|
49.315
|
50.685
|
18.630
|
12.055
|
39.178
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
12.070
|
16.824
|
10.698
|
8.388
|
8.048
|
6.490
|
0.406
|
3.286
|
13.717
|
22.215
|
18.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.881
|
-1.143
|
— | — | — |
-3.990
|
— |
-2.884
|
— | — | — | — | — |
No JSON data available for plots.