Hg_chrom5_TN10mRNA_10892
Organism: Heterodera glycines Gene Locus: chr5:10807136-10811208 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.852 | 1.429 | 0.602 | 0.489 | 1.103 | 0.667 | 0.732 | 2.128 | 1.576 | 1.086 | 0.716 | 2.503 | 2.167 | 0.773 | 0.965 | 0.743 | 0.853 | 0.967 | 1.819 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10262
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
33-82
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.098
|
0.074
|
0.031
|
0.241
|
0.855
|
0.238
|
0.360
|
0.063
|
0.310
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010073
|
1.000
|
1.000
|
Hsc_gene_3840.t1
|
Hsc_gene_3840.t1
|
— |
Q62452.3 UDP-glucuronosyltransferase 1A9 [Mus musculus]
|
KAI1730266.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.916|GO:0003674_0.725|GO:0009987_0.679|GO:0003824_0.635|GO:0008152_0.627|GO:0005575_0.612|GO:0110165_0.589|GO:0050896_0.545|GO:0016740_0.542|GO:0016020_0.540|GO:0044237_0.514|GO:0016757_0.513|GO:0016758_0.513|GO:0042221_0.501
|
IPR002213+108-418_186-360+|IPR035595+266-309+|IPR050271+24-418+
|
— |
PF00201+108-418+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+188-363+UDP-glucuronosyltransferase
|
PTHR48043+24-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
9kpx_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
48504.010
|
7.257
|
7.000
|
23.641
|
16.785
|
42.790
|
57.210
|
13.712
|
9.929
|
45.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
174.535
|
26.111
|
180.623
|
123.517
|
91.821
|
85.637
|
114.061
|
194.101
|
116.845
|
370.005
|
261.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.562
|
2.106
|
-0.440
|
-0.457
|
— |
0.419
|
1.077
|
-0.630
|
— | — | — | — | — |
No JSON data available for plots.