Hg_chrom5_TN10mRNA_10893
Organism: Heterodera glycines Gene Locus: chr5:10860420-10864078 Feature type: polypeptideProtein Sequence
Length: 348
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 2.005 | 0.888 | 0.991 | 1.006 | 1.474 | 0.547 | 0.862 | 1.533 | 1.67 | 0.697 | 1.69 | 1.437 | 0.608 | 0.586 | 1.067 | 0.848 | 0.74 | 0.442 | 0.761 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_3849
|
Hg_chrom5_TN10mRNA_10893
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-17
|
0.916
|
1.000
|
0.000
|
0.000
|
0.633
|
0.229
|
0.016
|
0.633
|
0.146
|
0.116
|
0.076
|
0.005
|
0.110
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010074
|
1.000
|
1.000
|
Hsc_gene_3849.t1
|
Hsc_gene_3849.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000210+170-249_171-279_180-276+|IPR002083+26-157_27-158+|IPR008974+25-165+|IPR011333+169-303_183-275+
|
SM00225+171-279+
|
PF00651+180-276+BTB/POZ_domain
|
— |
PTHR47022+52-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
38978.550
|
4.742
|
-9.000
|
20.115
|
10.057
|
47.126
|
52.874
|
9.195
|
10.920
|
48.563
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
565.007
|
0.894
|
1.793
|
1867.047
|
477.961
|
30.715
|
15.608
|
3.865
|
591.547
|
1129.040
|
898.686
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
10.886
|
10.166
|
-1.997
|
-3.945
|
-0.970
|
-3.117
|
2.160
|
— | — | — | — | — |