Hg_chrom5_TN10mRNA_10894
Organism: Heterodera glycines Gene Locus: chr5:10867537-10871881 Feature type: polypeptideProtein Sequence
Length: 497
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.965 | 1.024 | 1.179 | 0.973 | 0.774 | 0.814 | 1.71 | 1.52 | 0.897 | 0.762 | 0.71 | 1.23 | 0.89 | 0.862 | 0.661 | 0.957 | 0.884 | 1.703 | 1.479 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10264
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10894
|
22-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-17
|
0.968
|
1.000
|
0.000
|
0.000
|
0.203
|
0.146
|
0.117
|
0.257
|
0.084
|
0.071
|
0.137
|
0.017
|
0.257
|
0.852
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010075
|
1.000
|
1.000
|
Hsc_gene_3850.t1
|
Hsc_gene_3850.t1
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
AVA09709.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.792|GO:0032501_0.551|GO:0005575_0.535|GO:0110165_0.525|GO:0003674_0.521
|
IPR000859+375-494+|IPR001506+121-328_163-328_169-187_219-237_238-255_274-289_314-327+|IPR006026+136-279+|IPR017050+30-151_159-496+|IPR024079+62-330+|IPR034035+147-326+|IPR035914+391-464+
|
SM00235+136-279+
|
PF01400+163-328+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+74-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-497
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
56402.500
|
6.256
|
-2.500
|
24.145
|
15.091
|
46.076
|
53.924
|
12.676
|
11.469
|
52.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
492.280
|
39.493
|
43.126
|
52.996
|
87.784
|
428.090
|
89.950
|
190.677
|
7.070
|
1798.878
|
1030.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.403
|
0.698
|
2.301
|
-2.242
|
-1.295
|
— |
-8.126
|
— | — | — | — |