Hg_chrom5_TN10mRNA_10902
Organism: Heterodera glycines Gene Locus: chr5:10916101-10920953 Feature type: polypeptideProtein Sequence
Length: 551
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 1.224 | 1.287 | 0.688 | 0.968 | 0.698 | 0.821 | 1.18 | 1.452 | 0.907 | 0.852 | 1.601 | 1.563 | 1.012 | 1.0 | 0.907 | 0.744 | 0.935 | 1.675 | 1.068 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10902
|
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.966
|
1.000
|
0.000
|
0.000
|
0.110
|
0.257
|
0.023
|
0.357
|
0.211
|
0.350
|
0.187
|
0.028
|
0.230
|
0.893
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010077
|
1.000
|
1.000
|
Hsc_gene_3858.t1
|
Hsc_gene_3858.t1
|
— |
Q9UB00.2 Putative glucosylceramidase 4 [Caenorhabditis elegans]
|
KAI1726064.1 glycosyl hydrolase family 30 TIM-barrel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004348|GO:0006665
|
GO:0008150_0.945|GO:0003674_0.885|GO:0005575_0.864|GO:0110165_0.862|GO:0008152_0.816|GO:0003824_0.809|GO:0044238_0.786|GO:0009987_0.759|GO:0043170_0.736|GO:0016787_0.708|GO:0016020_0.685|GO:0005622_0.678|GO:0005737_0.665|GO:0044237_0.663|GO:0050896_0.663|GO:0016798_0.661|GO:0065007_0.661|GO:0005488_0.656|GO:0009058_0.656|GO:0050789_0.645|GO:0043226_0.634|GO:0032501_0.632|GO:0050794_0.632|GO:0051716_0.624|GO:0043229_0.623|GO:0044281_0.618|GO:0005515_0.612|GO:0051179_0.612|GO:0071840_0.612|GO:0019538_0.611|GO:0043227_0.611|GO:0006950_0.610|GO:0016043_0.610|GO:0006810_0.608|GO:0051234_0.608|GO:0009056_0.600|GO:0048518_0.600|GO:0048519_0.599|GO:0043231_0.598|GO:1901135_0.598|GO:0005576_0.596|GO:0019222_0.594|GO:0016740_0.593|GO:0023052_0.593|GO:0007154_0.591|GO:0048523_0.590|GO:0060255_0.588|GO:0065008_0.587|GO:0007165_0.586|GO:0080090_0.586|GO:0006629_0.585|GO:0010646_0.583|GO:0008610_0.581|GO:0009893_0.581|GO:0023051_0.581|GO:0048583_0.581|GO:0006996_0.580|GO:0044085_0.580|GO:0055085_0.580|GO:0009057_0.579|GO:0044248_0.579|GO:1901615_0.579|GO:0009966_0.578|GO:0044255_0.578|GO:0010604_0.576|GO:0009892_0.575|GO:0022607_0.575|GO:0051128_0.575|GO:0051246_0.575|GO:0003008_0.574|GO:0010605_0.574|GO:0006811_0.573|GO:0006066_0.572|GO:0034220_0.572|GO:0035556_0.572|GO:1902531_0.572|GO:0009894_0.571|GO:0043933_0.571|GO:0070085_0.571|GO:0016042_0.570|GO:0030163_0.570|GO:0065003_0.570|GO:0008202_0.568|GO:0044087_0.568|GO:0044242_0.568|GO:0050877_0.568|GO:0051248_0.568|GO:0043603_0.567|GO:0006643_0.564|GO:0006664_0.564|GO:0006665_0.564|GO:0006672_0.564|GO:0006677_0.564|GO:0006678_0.564|GO:0006680_0.564|GO:0006687_0.564|GO:0006914_0.564|GO:0007033_0.564|GO:0007040_0.564|GO:0008203_0.564|GO:0016125_0.564|GO:0016236_0.564|GO:0019377_0.564|GO:0030149_0.564|GO:0030258_0.564|GO:0030259_0.564|GO:0031333_0.564|GO:0031929_0.564|GO:0032006_0.564|GO:0042176_0.564|GO:0042391_0.564|GO:0043254_0.564|GO:0046466_0.564|GO:0046477_0.564|GO:0046479_0.564|GO:0046514_0.564|GO:0051129_0.564|GO:0051247_0.564|GO:0061919_0.564|GO:0080171_0.564|GO:1901136_0.564|GO:1902652_0.564|GO:1903509_0.564|GO:0016757_0.558|GO:0004553_0.557|GO:0016758_0.557|GO:0005102_0.554|GO:0004348_0.547|GO:0008422_0.547|GO:0015926_0.547|GO:0017042_0.547|GO:0046527_0.547|GO:0005773_0.516
|
IPR001139+22-550+|IPR013780+473-551+|IPR017853+126-476+|IPR033452+488-547+|IPR033453+126-472+
|
— |
PF02055+126-472+Glycosyl_hydrolase_family_30_TIM-barrel_domain|PF17189+488-547+Glycosyl_hydrolase_family_30_beta_sandwich_domain
|
G3DSA:3.20.20.80:FF:000030+105-476+Lysosomal_acid_glucosylceramidase
|
PTHR11069+22-550+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
62181.580
|
5.639
|
-6.500
|
25.771
|
13.793
|
44.646
|
55.354
|
12.886
|
12.886
|
51.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
2217.418
|
182.138
|
832.836
|
1963.108
|
5261.153
|
6779.146
|
1501.493
|
7319.603
|
186.456
|
621.557
|
435.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.964
|
3.293
|
1.345
|
1.389
|
0.383
|
-2.167
|
— |
-2.145
|
— |
3.492
|
3.288
|
— | — |