Hg_chrom5_TN10mRNA_10904
Organism: Heterodera glycines Gene Locus: chr5:10929839-10933134 Feature type: polypeptideProtein Sequence
Length: 476
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.319 | 0.726 | 1.159 | 0.84 | 0.97 | 0.825 | 1.366 | 1.914 | 1.136 | 1.337 | 1.112 | 1.926 | 0.566 | 0.857 | 1.02 | 0.93 | 0.573 | 1.293 | 0.741 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10274
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10904
|
27-Not_Clustered
|
0.485
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RKFEKCTIFNTTRIKRKKR
|
44-77
|
0.863
|
35-95
|
0.744
|
1-22
|
0.949
|
1.000
|
0.000
|
0.000
|
0.205
|
0.270
|
0.036
|
0.312
|
0.238
|
0.080
|
0.255
|
0.015
|
0.180
|
0.829
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002262
|
1.000
|
3.000
|
Hsc_gene_3860.t1;Hsc_gene_3860.t2;Hsc_gene_3860.t3
|
Hsc_gene_3863.t1;Hsc_gene_3863.t2;Hsc_gene_3863.t3
|
— |
Q8BZ10.2 Transmembrane protease serine 11G [Mus musculus]
|
XP_042610719.1 trypsin II-P29-like [Cyprinus carpio]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.819|GO:0005575_0.760|GO:0110165_0.760|GO:0003674_0.704|GO:0003824_0.569|GO:0016787_0.526|GO:0140096_0.521|GO:0008233_0.508
|
IPR001254+229-466_230-471_232-466+|IPR001314+265-280_332-346_416-428+|IPR009003+228-471+|IPR043504+223-470+|IPR051333+213-470+
|
SM00020+229-466+
|
PF00089+232-466+Trypsin
|
— |
PTHR24260+213-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-476
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
53989.470
|
9.418
|
25.500
|
24.790
|
13.866
|
47.059
|
52.941
|
15.756
|
9.034
|
45.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
138.544
|
5.954
|
11.469
|
37.937
|
15.456
|
68.969
|
122.100
|
81.119
|
0.000
|
477.506
|
272.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.534
|
1.838
|
-1.327
|
2.172
|
0.831
|
— |
0.730
|
-24.728
|
6.103
|
— | — | — |