Hg_chrom5_TN10mRNA_10907
Organism: Heterodera glycines Gene Locus: chr5:10943674-10946684 Feature type: polypeptideProtein Sequence
Length: 322
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 1.733 | 0.96 | 1.178 | 1.294 | 1.672 | 0.37 | 0.311 | 1.449 | 1.301 | 1.6 | 2.009 | 1.553 | 0.358 | 0.57 | 0.71 | 0.815 | 0.753 | 0.717 | 1.461 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10277
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10907
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
RKIKTNILSNADGKKIKL
|
— | — | — | — |
1-25
|
0.903
|
1.000
|
0.000
|
0.000
|
0.617
|
0.474
|
0.011
|
0.602
|
0.119
|
0.098
|
0.036
|
0.017
|
0.200
|
0.229
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004029
|
2.000
|
1.000
|
Hsc_gene_22524.t1
|
— | — | — |
KAI3408551.1 hypothetical protein GPALN_010164 [Globodera pallida]
|
MCY4162365
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
305-322
|
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
37766.560
|
7.380
|
2.000
|
27.019
|
12.112
|
50.932
|
49.068
|
13.975
|
13.043
|
40.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
338.545
|
3.226
|
134.574
|
126.812
|
22.433
|
3.755
|
2.028
|
3.333
|
1382.610
|
333.118
|
782.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.159
|
5.164
|
— |
-2.534
|
-2.564
|
— | — | — | — |
-3.269
|
-3.768
|
— | — |