Hg_chrom5_TN10mRNA_10909
Organism: Heterodera glycines Gene Locus: chr5:10954887-10963043 Feature type: polypeptideProtein Sequence
Length: 755
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 1.633 | 1.276 | 0.183 | 1.214 | 1.766 | 0.378 | 0.993 | 1.589 | 0.716 | 1.365 | 2.649 | 0.699 | 0.891 | 0.838 | 1.495 | 0.76 | 0.622 | 0.204 | 0.623 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10909
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRIR,KRSR,KKIRDFINLLDQEIPKYKK,KQKAGRQKKPKIDEKMEKAKSKMGVEKAPIKPAKHKSKMTMGR
|
— | — | — | — |
1-20
|
0.997
|
1.000
|
0.000
|
0.000
|
0.865
|
0.095
|
0.012
|
0.437
|
0.043
|
0.025
|
0.024
|
0.008
|
0.114
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010081
|
1.000
|
1.000
|
Hsc_gene_3868.t1
|
— | — | — | — |
WP_339075216
|
0.580
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000953+621-673+|IPR016197+616-675+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
95-599
|
2.000
|
1-94;600-755
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
85002.450
|
6.368
|
-1.500
|
29.404
|
6.887
|
58.411
|
41.589
|
15.099
|
14.305
|
48.874
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
951.601
|
11.316
|
111.548
|
412.789
|
93.369
|
17.296
|
9.949
|
6.641
|
3953.048
|
949.876
|
2236.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.074
|
5.051
|
1.996
|
-2.174
|
-2.419
|
-0.786
|
-1.484
|
— | — |
-3.105
|
— | — | — |