Hg_chrom5_TN10mRNA_10916
Organism: Heterodera glycines Gene Locus: chr5:11003285-11013908 Feature type: polypeptideProtein Sequence
Length: 1,859
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 2.027 | 0.929 | 0.445 | 1.488 | 1.103 | 0.314 | 1.183 | 1.781 | 1.316 | 1.679 | 1.677 | 1.718 | 0.424 | 0.593 | 0.891 | 0.591 | 0.734 | 1.241 | 0.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10286
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKGTKEKIVEKSKCKNKKPKKKNKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.199
|
0.007
|
0.625
|
0.156
|
0.184
|
0.142
|
0.017
|
0.118
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002263
|
1.000
|
3.000
|
Hsc_gene_17226.t1;Hsc_gene_17226.t2;Hsc_gene_25874.t1
|
Hsc_gene_25874.t1
|
— |
O42617.1 Poly(A) polymerase PAPalpha [Candida albicans SC5314]
|
XP_011498242.1 PREDICTED: poly(A) polymerase type 3-like isoform X2 [Ceratosolen solmsi marchali]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.691|GO:0110165_0.691|GO:0005622_0.650|GO:0016020_0.636|GO:0043226_0.613|GO:0043229_0.593|GO:0003674_0.582|GO:0008150_0.581|GO:0043227_0.556|GO:0043231_0.535
|
IPR007012+1723-1849+
|
— |
PF04928+1723-1849+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1720-1848+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1093-1148
|
2.000
|
1-1092;1149-1859
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
218376.150
|
7.512
|
21.000
|
30.393
|
12.964
|
53.254
|
46.746
|
16.353
|
14.040
|
39.215
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1098.824
|
8.198
|
501.996
|
330.609
|
58.824
|
24.974
|
12.334
|
9.948
|
3654.097
|
1711.702
|
2544.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.710
|
5.198
|
-0.495
|
-2.526
|
-1.222
|
-1.016
|
-1.436
|
— | — |
-3.296
|
-4.609
|
— | — |
No JSON data available for plots.