Hg_chrom5_TN10mRNA_10922
Organism: Heterodera glycines Gene Locus: chr5:11050444-11051291 Feature type: polypeptideProtein Sequence
Length: 242
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.144 | 1.634 | 0.826 | 0.285 | 1.928 | 0.954 | 0.59 | 1.033 | 1.928 | 0.949 | 3.068 | 1.702 | 1.722 | 0.238 | 0.759 | 0.531 | 0.474 | 0.313 | 1.907 | 0.851 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10922
|
— | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKFDLIKEKLKEKGK,KKHNTNEDKLKKMKQ,KKNKMKKSFYEQKKKEF,KRELIKKFDLIKEKLKEK,KKLGISQDTLRIWKKKFA,IKEKLKEKGKCQHKNRVKIERKIGKLLGANRKNIYKWKTELNLNKIKKNKMKKS
|
— | — | — | — |
1-20
|
0.914
|
0.998
|
0.000
|
0.000
|
0.876
|
0.194
|
0.024
|
0.426
|
0.120
|
0.061
|
0.058
|
0.014
|
0.100
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000042
|
25.000
|
0.000
|
0.000
|
— | — | — |
KAI3417802.1 hypothetical protein GPALN_012077 [Globodera pallida]
|
HIF93075
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
29432.240
|
10.296
|
21.500
|
42.149
|
13.636
|
59.504
|
40.496
|
26.033
|
16.116
|
28.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
green
|
70.186
|
0.000
|
2.409
|
6.087
|
1.176
|
0.770
|
0.000
|
0.548
|
194.858
|
156.801
|
173.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.603
|
7.035
|
1.446
|
-2.415
|
— | — | — | — | — |
-4.860
|
— | — | — |