Hg_chrom5_TN10mRNA_10929
Organism: Heterodera glycines Gene Locus: chr5:11094168-11095881 Feature type: polypeptideProtein Sequence
Length: 492
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.284 | 1.985 | 0.924 | 0.28 | 2.439 | 1.147 | 0.387 | 0.102 | 2.213 | 0.934 | 2.679 | 1.315 | 1.299 | 0.352 | 0.705 | 0.523 | 0.666 | 0.462 | 0.625 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10299
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10929
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRVK,KRKFGFSIREKKRYS,KKFDTNPDTIYKLKKE,RKEKICGLKYDEKKMTK,KKEKTLEEQNNKLKIKIK,KKRYSDAEKLEYVKRSEK,RKIAEKFGVDRQNLRRWTK
|
— | — | — | — |
1-19
|
0.846
|
0.997
|
0.000
|
0.000
|
0.888
|
0.094
|
0.011
|
0.327
|
0.036
|
0.020
|
0.015
|
0.008
|
0.054
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000292
|
8.000
|
1.000
|
Hsc_gene_24911.t1
|
— | — | — | — |
CAD8147635
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-272
|
2.000
|
1-148;273-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
58635.340
|
9.116
|
7.500
|
41.057
|
7.927
|
61.789
|
38.211
|
21.341
|
19.715
|
32.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
287.104
|
0.149
|
0.444
|
38.273
|
12.085
|
1.364
|
0.205
|
0.279
|
160.542
|
1115.877
|
706.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.830
|
6.559
|
-1.697
|
-3.124
|
— | — | — | — | — |
-6.450
|
— | — |