Hg_chrom5_TN10mRNA_10931
Organism: Heterodera glycines Gene Locus: chr5:11129417-11138279 Feature type: polypeptideProtein Sequence
Length: 623
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.568 | 0.671 | 0.332 | 0.963 | 1.194 | 0.975 | 1.685 | 1.106 | 1.345 | 0.608 | 1.227 | 1.561 | 0.988 | 1.507 | 1.215 | 0.526 | 0.657 | 1.605 | 1.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10301
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKPR,RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.048
|
0.103
|
0.012
|
0.144
|
0.299
|
0.247
|
0.161
|
0.009
|
0.520
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000843
|
4.000
|
2.000
|
Hsc_gene_11643.t1;Hsc_gene_14342.t1
|
Hsc_gene_11643.t1;Hsc_gene_14342.t1;Hsc_gene_3222.t1;Hsc_gene_3222.t2
|
— |
Q19746.2 Innexin-3 [Caenorhabditis elegans]
|
KAH7726044.1 innexin inx-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.899|GO:0110165_0.894|GO:0008150_0.843|GO:0009987_0.719|GO:0030054_0.621|GO:0003674_0.565|GO:0065007_0.556|GO:0016020_0.550|GO:0050789_0.539|GO:0051179_0.536|GO:0032501_0.533|GO:0005911_0.528|GO:0070161_0.528|GO:0006810_0.525|GO:0051234_0.525|GO:0005921_0.506
|
IPR000990+64-436_67-486_70-430_123-132_152-174_247-261_295-304_319-335+
|
— |
PF00876+70-430+Innexin
|
— |
PTHR11893+67-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30;434-623
|
1.000
|
31-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
71542.920
|
9.405
|
22.500
|
24.238
|
15.570
|
47.352
|
52.648
|
14.767
|
9.470
|
45.586
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1723.969
|
5781.489
|
1114.186
|
1534.265
|
1197.815
|
2071.827
|
1801.729
|
1013.422
|
1446.667
|
1014.339
|
1199.622
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.605
|
-2.051
|
0.570
|
-0.390
|
0.806
|
-0.192
|
-1.138
|
0.971
|
— | — | — | — | — |
No JSON data available for plots.