SCN Proteipedia

Hg_chrom5_TN10mRNA_10937

Organism: Heterodera glycines Gene Locus: chr5:11189615-11193005 Feature type: polypeptide

Protein Sequence

Length: 467

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.722	1.594	0.818	1.255	1.106	1.098	0.382	1.178	1.142	1.302	1.33	2.519	1.606	0.988	0.787	1.071	0.737	0.616	0.329	0.945	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10307	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	21-Not_Clustered	0.937

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRTVMLQIPYVCKKRGN,KKRGNCEMSTPYNKRKCG	—	—	40-66	0.932	—	—	0.000	—	—	0.791	0.102	0.009	0.485	0.042	0.031	0.054	0.003	0.097	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003265	2.000	1.000	Hsc_gene_14352.t1	—	—	O17706.2 Nuclear hormone receptor family member nhr-169 [Caenorhabditis elegans]	KAH7714093.1 zinc finger protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.963\|GO:0065007_0.869\|GO:0050789_0.854\|GO:0009987_0.842\|GO:0050794_0.816\|GO:0003674_0.795\|GO:0005575_0.763\|GO:0110165_0.756\|GO:0008152_0.735\|GO:0043170_0.735\|GO:0009058_0.724\|GO:0019222_0.724\|GO:0009059_0.721\|GO:0044237_0.721\|GO:0044249_0.721\|GO:0031323_0.717\|GO:0005622_0.711\|GO:0005488_0.710\|GO:0060255_0.707\|GO:0044238_0.704\|GO:0043226_0.695\|GO:0009889_0.692\|GO:0031326_0.688\|GO:0010556_0.684\|GO:0010467_0.678\|GO:0080090_0.678\|GO:0043229_0.668\|GO:0006139_0.661\|GO:0010468_0.655\|GO:0090304_0.632\|GO:0019219_0.631\|GO:0034654_0.629\|GO:0141187_0.623\|GO:0016070_0.618\|GO:0032774_0.614\|GO:0006351_0.600\|GO:0051252_0.597\|GO:0016020_0.593\|GO:0006355_0.590\|GO:2001141_0.590\|GO:0097159_0.552\|GO:0050896_0.537\|GO:0043227_0.533\|GO:0003676_0.532\|GO:0043231_0.519\|GO:0048518_0.511\|GO:0003677_0.503\|GO:0043565_0.503	IPR000536+263-461+\|IPR001628+15-87_15-91_17-85_18-34_34-49_68-76_76-84+\|IPR013088+8-119+\|IPR035500+273-443_295-450+\|IPR050274+13-450+	SM00399+15-87+	PF00105+17-85+Zinc_finger,_C4_type_(two_domains)	—	PTHR24083+13-450+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;111-207	2.000	4-110;208-467	4umm_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.794	53507.830	8.241	12.500	26.124	11.777	49.251	50.749	14.989	11.135	45.610

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	207.060	1.006	13.496	165.780	47.005	8.648	5.572	4.182	354.232	548.078	465.001

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.529	7.243	3.730	-1.851	-2.428	—	—	—	—	—	—	—	—

No JSON data available for plots.

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