Hg_chrom5_TN10mRNA_10938
Organism: Heterodera glycines Gene Locus: chr5:11195757-11200405 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 1.221 | 1.114 | 1.056 | 0.875 | 1.066 | 0.599 | 1.422 | 1.362 | 1.508 | 1.127 | 1.802 | 1.094 | 0.715 | 1.34 | 1.157 | 0.61 | 0.564 | 1.178 | 1.416 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10308
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRPIFVKGVQECVHGKRKK
|
— | — |
19-52
|
0.983
|
— | — |
0.000
|
— | — |
0.053
|
0.097
|
0.004
|
0.124
|
0.299
|
0.197
|
0.894
|
0.008
|
0.262
|
0.480
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010089
|
1.000
|
1.000
|
Hsc_gene_14353.t1
|
Hsc_gene_14353.t1
|
— |
A5Z2X3.1 Galactoside 2-alpha-L-fucosyltransferase [Caenorhabditis elegans]
|
KAI1709431.1 glycosyl transferase family 11 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008107|GO:0016020
|
GO:0008150_0.955|GO:0009987_0.565|GO:0065007_0.532|GO:0003674_0.526|GO:0050789_0.522
|
IPR002516+254-444+|IPR052501+141-446+
|
— |
PF01531+254-444+Glycosyl_transferase_family_11
|
— |
PTHR22898+141-446+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
53112.080
|
8.838
|
18.500
|
28.228
|
13.129
|
49.453
|
50.547
|
16.849
|
11.379
|
43.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
942.191
|
21.126
|
214.806
|
121.837
|
33.912
|
1510.325
|
624.123
|
719.127
|
1629.445
|
1683.033
|
1660.067
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.123
|
2.391
|
-0.713
|
-1.875
|
5.489
|
-1.266
|
-1.170
|
— | — |
-3.578
|
-5.117
|
— | — |
No JSON data available for plots.