Hg_chrom5_TN10mRNA_10944
Organism: Heterodera glycines Gene Locus: chr5:11218216-11221810 Feature type: polypeptideProtein Sequence
Length: 547
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.319 | 1.786 | 0.931 | 0.126 | 1.371 | 1.594 | 0.522 | 1.645 | 1.788 | 1.482 | 1.413 | 0.753 | 1.27 | 0.527 | 0.933 | 0.94 | 0.749 | 0.72 | 0.984 | 0.968 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10314
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10944
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKIAKDEQNKMHERFLKK
|
— | — | — | — |
1-23
|
0.769
|
0.676
|
0.000
|
0.000
|
0.415
|
0.314
|
0.024
|
0.666
|
0.173
|
0.346
|
0.172
|
0.023
|
0.170
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002264
|
1.000
|
3.000
|
Hsc_gene_14360.t1;Hsc_gene_14362.t1;Hsc_gene_14362.t2
|
— | — |
Q60303.1 Uncharacterized protein MJECS04 [Methanocaldococcus jannaschii DSM 2661]
|
KAI1729841.1 histidine phosphatase superfamily (branch 1) domain-containing protein [Ditylenchus destructor]
|
WP_027074247
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0003674_0.836|GO:0005488_0.789|GO:0005515_0.756|GO:0003824_0.715|GO:0140096_0.687|GO:0016787_0.684|GO:0042802_0.670|GO:0016788_0.663|GO:0046983_0.656|GO:0042803_0.655|GO:0016791_0.654|GO:0042578_0.654|GO:0004721_0.650|GO:0004725_0.650|GO:0102531_0.650
|
IPR001345+279-288+|IPR013078+276-384_276-490_323-399+|IPR029033+267-544_276-540+|IPR051710+276-497+
|
SM00855+276-490+
|
PF00300+323-399+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+276-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
545-547
|
1.000
|
1-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
64054.950
|
8.662
|
12.000
|
30.530
|
12.431
|
55.576
|
44.424
|
17.185
|
13.346
|
38.940
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
324.494
|
2.447
|
91.165
|
418.399
|
40.681
|
17.005
|
7.912
|
23.349
|
1271.568
|
240.626
|
682.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.993
|
7.280
|
2.304
|
-3.398
|
-1.242
|
-1.090
|
— |
-1.418
|
— | — | — | — | — |