Hg_chrom5_TN10mRNA_10945
Organism: Heterodera glycines Gene Locus: chr5:11222266-11226012 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.287 | 0.252 | 0.477 | 0.988 | 0.76 | 0.8 | 0.494 | 2.24 | 1.415 | 0.749 | 1.628 | 2.47 | 0.722 | 0.645 | 1.101 | 0.972 | 0.928 | 1.368 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10315
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10945
|
18-ppJ2_pJ2_J3_J4_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.069
|
0.196
|
0.006
|
0.147
|
0.224
|
0.494
|
0.333
|
0.008
|
0.674
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010091
|
1.000
|
1.000
|
Hsc_gene_14363.t1
|
Hsc_gene_14363.t1
|
— |
O44827.2 Facilitated glucose transporter protein 1 [Caenorhabditis elegans]
|
KAF7635598.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.907|GO:0005575_0.873|GO:0110165_0.873|GO:0009987_0.835|GO:0016020_0.835|GO:0071944_0.797|GO:0006810_0.795|GO:0051179_0.795|GO:0051234_0.795|GO:0005886_0.789|GO:0055085_0.751|GO:0003674_0.690|GO:0005215_0.682|GO:0022857_0.682|GO:0008643_0.572|GO:0034219_0.569|GO:0015749_0.564|GO:0005622_0.563|GO:0008645_0.562|GO:0043226_0.558|GO:0043229_0.545|GO:0005737_0.535|GO:1904659_0.519
|
IPR003663+41-494_51-61_151-170_311-321_400-421_423-435+|IPR005828+47-496+|IPR005829+156-181+|IPR020846+43-487+|IPR036259+32-502_90-496+|IPR045263+43-503+
|
— |
PF00083+47-496+Sugar_(and_other)_transporter
|
G3DSA:1.20.1250.20:FF:001511+23-504+Solute_carrier_family_2,_facilitated_glucose_transporter_member_5
|
PTHR23503+43-503+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
56541.280
|
8.352
|
6.500
|
16.403
|
13.834
|
38.538
|
61.462
|
9.091
|
7.312
|
45.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
324.181
|
34.428
|
384.641
|
85.072
|
288.046
|
287.517
|
88.178
|
1059.005
|
429.060
|
261.416
|
333.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.253
|
1.167
|
-2.069
|
1.727
|
— |
-1.704
|
1.780
|
-3.454
|
— | — | — | — | — |
No JSON data available for plots.