Hg_chrom5_TN10mRNA_10948
Organism: Heterodera glycines Gene Locus: chr5:11234065-11234837 Feature type: polypeptideProtein Sequence
Length: 241
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.241 | 1.64 | 0.528 | 0.0 | 2.006 | 1.064 | 0.741 | 0.207 | 2.305 | 0.953 | 2.766 | 1.22 | 1.383 | 0.399 | 1.186 | 0.593 | 0.34 | 0.377 | 1.915 | 0.976 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10318
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10948
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
RKFEVIKEKLKERGK,KREIIRKFEVIKEKLKER,RKIGKLLGANRDKIYKWKK,LRKMRKYRKIKENNPKISEEIITKKLGIGRVTLRRWKKKFSKV
|
— | — | — | — |
1-19
|
0.991
|
1.000
|
0.000
|
0.000
|
0.793
|
0.285
|
0.053
|
0.476
|
0.298
|
0.058
|
0.073
|
0.022
|
0.170
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000042
|
25.000
|
0.000
|
0.000
|
— | — | — |
KAI3411791.1 hypothetical protein GPALN_001856, partial [Globodera pallida]
|
WP_086479226
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-241
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
29017.810
|
10.517
|
22.500
|
39.419
|
11.203
|
56.846
|
43.154
|
24.481
|
14.938
|
29.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
119.599
|
0.000
|
4.696
|
27.051
|
3.409
|
1.493
|
0.611
|
0.280
|
105.930
|
429.719
|
290.952
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.575
|
9.187
|
2.625
|
-3.025
|
— | — | — | — | — | — |
-6.725
|
— | — |