Hg_chrom5_TN10mRNA_10949
Organism: Heterodera glycines Gene Locus: chr5:11242668-11247362 Feature type: polypeptideProtein Sequence
Length: 549
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.567 | 0.695 | 0.063 | 1.275 | 1.261 | 0.542 | 0.911 | 2.145 | 1.305 | 1.132 | 1.607 | 1.821 | 0.736 | 0.855 | 0.963 | 0.567 | 0.635 | 1.261 | 0.643 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10319
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10949
|
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.996
|
1.000
|
0.000
|
0.000
|
0.251
|
0.269
|
0.064
|
0.433
|
0.372
|
0.133
|
0.203
|
0.038
|
0.286
|
0.364
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004223
|
1.000
|
2.000
|
Hsc_gene_14367.t1;Hsc_gene_14367.t2
|
Hsc_gene_14367.t1;Hsc_gene_14367.t2
|
— |
Q22295.2 Putative UDP-glucuronosyltransferase ugt-50 [Caenorhabditis elegans]
|
KAI1702768.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.837|GO:0005575_0.743|GO:0003674_0.723|GO:0110165_0.711|GO:0009987_0.701|GO:0005622_0.667|GO:0016020_0.664|GO:0043226_0.624|GO:0005737_0.618|GO:0003824_0.615|GO:0043229_0.610|GO:0043227_0.583|GO:0016740_0.562|GO:0043231_0.560|GO:0008152_0.552|GO:0016757_0.533|GO:0016758_0.532|GO:0044237_0.530|GO:0008194_0.527|GO:0050896_0.522|GO:0071944_0.502
|
IPR002213+275-526_335-527+|IPR035595+435-477+|IPR050271+62-531+
|
— |
PF00201+335-527+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+62-531+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-549
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
62772.430
|
8.081
|
6.000
|
24.954
|
12.204
|
46.812
|
53.188
|
13.479
|
11.475
|
41.530
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
278.003
|
1.209
|
7.464
|
3.316
|
16.722
|
65.725
|
78.523
|
14.232
|
5.748
|
1141.757
|
654.896
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.379
|
— |
-1.055
|
2.302
|
1.990
|
— |
-2.323
|
2.607
|
-7.730
|
— |
-5.631
|
— | — |