Hg_chrom5_TN10mRNA_10951
Organism: Heterodera glycines Gene Locus: chr5:11254773-11257430 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.56 | 1.914 | 0.721 | 0.421 | 1.118 | 1.251 | 0.944 | 1.22 | 1.626 | 0.865 | 0.601 | 2.331 | 0.847 | 0.762 | 1.12 | 0.479 | 0.7 | 1.34 | 0.469 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10321
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10951
|
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.464
|
0.306
|
0.100
|
0.644
|
0.118
|
0.201
|
0.070
|
0.026
|
0.133
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010094
|
1.000
|
1.000
|
Hsc_gene_14370.t1
|
Hsc_gene_14370.t1
|
— |
B8G663.1 Pyridoxal 5'-phosphate synthase subunit PdxS [Chloroflexus aggregans DSM 9485]
|
ACB14340.1 PLP synthase [Heterodera glycines];ACF10392.1 PLP synthase [Heterodera glycines]
|
MDT8452895
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042819|GO:0042823
|
GO:0005575_0.726|GO:0110165_0.711|GO:0008150_0.676|GO:0003674_0.623|GO:0008152_0.543|GO:0009987_0.534|GO:0005622_0.530|GO:0005737_0.515
|
IPR001852+32-328_36-316_46-314_48-317_49-316_242-260+|IPR011060+55-304+|IPR013785+36-324+|IPR033755+47-249+
|
— |
PF01680+47-249+SOR/SNZ_family
|
G3DSA:3.20.20.70:FF:000001+38-327+Pyridoxine_biosynthesis_protein_PDX1
|
PTHR31829+36-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-44;327-328
|
1.000
|
45-326
|
7lb6_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
35236.300
|
6.498
|
0.000
|
22.561
|
6.098
|
43.293
|
56.707
|
11.890
|
10.671
|
55.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
2158.130
|
375.333
|
1197.704
|
1362.097
|
2409.006
|
2358.964
|
1391.514
|
1668.513
|
110.474
|
5322.790
|
3088.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.446
|
1.722
|
0.293
|
0.790
|
— |
-0.753
|
-0.600
|
— |
-3.622
|
— | — | — | — |
No JSON data available for plots.