Hg_chrom5_TN10mRNA_10952
Organism: Heterodera glycines Gene Locus: chr5:11257705-11258871 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.78 | 1.02 | 1.056 | 0.68 | 1.439 | 0.911 | 1.276 | 1.587 | 1.448 | 0.618 | 0.6 | 1.276 | 0.785 | 1.041 | 0.51 | 0.836 | 1.314 | 0.0 | 0.3 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10322
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10952
|
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.540
|
0.585
|
0.056
|
0.725
|
0.228
|
0.295
|
0.174
|
0.185
|
0.111
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010095
|
1.000
|
1.000
|
Hsc_gene_14371.t1
|
Hsc_gene_14371.t1
|
— |
A4XIB6.1 Pyridoxal 5'-phosphate synthase subunit PdxT [Caldicellulosiruptor saccharolyticus DSM 8903]
|
ACB14341.1 glutamine amidotransferase [Heterodera glycines];ACF10393.1 glutamine amidotransferase [Heterodera glycines]
|
MEC7872764
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004359|GO:0042819|GO:0042823
|
GO:0008150_0.653|GO:0005575_0.569|GO:0110165_0.563|GO:0009987_0.508
|
IPR002161+1-194_1-196_5-193_5-196_8-189+|IPR021196+43-53+|IPR029062+2-196_5-195+
|
SM01211+4-193+
|
PF01174+8-189+SNO_glutamine_amidotransferase_family
|
— |
PTHR31559+1-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
21350.520
|
6.932
|
1.500
|
21.429
|
8.163
|
43.367
|
56.633
|
11.735
|
9.694
|
54.082
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
145.411
|
125.795
|
234.061
|
171.848
|
211.547
|
225.657
|
242.482
|
328.499
|
37.390
|
30.670
|
33.550
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
0.313
|
-0.339
|
0.268
|
— | — |
0.440
|
— | — | — | — | — | — |
No JSON data available for plots.