Hg_chrom5_TN10mRNA_10953
Organism: Heterodera glycines Gene Locus: chr5:11266891-11269848 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 1.72 | 0.747 | 0.189 | 2.009 | 1.124 | 0.62 | 0.685 | 2.07 | 0.555 | 2.408 | 1.289 | 1.294 | 0.316 | 1.062 | 0.587 | 0.629 | 0.415 | 1.686 | 1.289 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10323
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_10953
|
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRKL,KKLNSSRTAIYKWKRE,GKYLRKKEPKGKKNIH,KREFGLNEMKKQDRLKKW,KKWGTNSRTIYRWKKKLG,KKLGQTQSYNSFSAEEKRK
|
— | — | — | — | — |
0.772
|
0.173
|
0.000
|
— |
0.913
|
0.061
|
0.006
|
0.295
|
0.011
|
0.009
|
0.008
|
0.004
|
0.040
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010096
|
1.000
|
1.000
|
Hsc_gene_14374.t1
|
Hsc_gene_14374.t1
|
— | — | — |
WP_347436351
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-365
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
43634.830
|
9.999
|
20.500
|
38.630
|
12.603
|
58.356
|
41.644
|
22.466
|
16.164
|
34.247
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
328.013
|
0.386
|
12.932
|
47.790
|
23.555
|
6.006
|
0.909
|
2.074
|
626.660
|
929.942
|
799.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.846
|
6.827
|
1.995
|
-1.053
|
-1.956
|
-2.726
|
-1.641
|
— | — |
-3.606
|
-4.862
|
— | — |