Hg_chrom5_TN10mRNA_10954
Organism: Heterodera glycines Gene Locus: chr5:11272580-11278761 Feature type: polypeptideProtein Sequence
Length: 520
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.492 | 1.61 | 1.224 | 1.061 | 0.833 | 0.986 | 0.733 | 1.442 | 1.624 | 1.143 | 1.224 | 0.792 | 1.335 | 0.888 | 0.863 | 1.154 | 1.04 | 0.495 | 0.592 | 1.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10324
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10954
|
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKKK
|
— | — | — | — |
1-18
|
0.728
|
0.716
|
0.000
|
0.000
|
0.238
|
0.129
|
0.084
|
0.186
|
0.142
|
0.061
|
0.147
|
0.048
|
0.279
|
0.877
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010097
|
1.000
|
1.000
|
Hsc_gene_14375.t1
|
Hsc_gene_14375.t1
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI1722970.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.780|GO:0005575_0.664|GO:0110165_0.664|GO:0003674_0.586|GO:0032501_0.535
|
IPR000742+316-356_344-355+|IPR000859+366-479+|IPR001506+116-321_129-321_152-170_209-227_228-245_267-282_307-320+|IPR006026+125-272+|IPR017050+5-518+|IPR024079+67-323+|IPR034035+131-319+|IPR035914+366-486_384-462+
|
SM00042+366-479+|SM00235+125-272+
|
PF01400+129-321+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000028+66-323+Zinc_metalloproteinase
|
PTHR10127+69-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
490-520
|
1.000
|
1-489
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
58884.650
|
7.833
|
10.500
|
26.923
|
12.308
|
52.115
|
47.885
|
15.192
|
11.731
|
49.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
pink
|
511.817
|
2.137
|
6.462
|
91.676
|
408.683
|
341.487
|
12.773
|
45.422
|
176.485
|
1766.097
|
1084.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.361
|
5.283
|
3.943
|
2.123
|
— |
-4.734
|
-3.024
|
-1.687
|
— | — | — | — | — |