Hg_chrom5_TN10mRNA_10956
Organism: Heterodera glycines Gene Locus: chr5:11283900-11289272 Feature type: polypeptideProtein Sequence
Length: 747
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 2.709 | 0.803 | 0.785 | 0.513 | 1.304 | 0.685 | 0.87 | 1.577 | 0.995 | 0.385 | 1.496 | 0.818 | 1.21 | 1.202 | 1.186 | 1.119 | 0.669 | 0.618 | 0.906 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10956
|
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
21-41
|
0.987
|
— | — |
1-19
|
0.936
|
1.000
|
0.000
|
0.000
|
0.211
|
0.106
|
0.044
|
0.273
|
0.079
|
0.067
|
0.075
|
0.067
|
0.290
|
0.802
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010098
|
1.000
|
1.000
|
Hsc_gene_14378.t2
|
— | — |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI1722970.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.795|GO:0005575_0.634|GO:0110165_0.632|GO:0003674_0.591|GO:0032501_0.526|GO:0032502_0.507|GO:0048856_0.507
|
IPR000742+333-373_361-372+|IPR000859+385-498_386-498_404-495+|IPR001506+137-338_147-338_168-186_226-244_245-262_284-299_324-337+|IPR006026+143-289+|IPR024079+82-340+|IPR034035+151-336+|IPR035914+386-498_404-497+
|
SM00042+385-498+|SM00235+143-289+
|
PF00431+404-495+CUB_domain|PF01400+147-338+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000028+82-340+Zinc_metalloproteinase
|
PTHR10127+90-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
515-747
|
1.000
|
1-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
82285.380
|
8.239
|
13.500
|
17.671
|
8.568
|
49.531
|
50.469
|
10.174
|
7.497
|
57.831
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
901.013
|
5.900
|
12.191
|
244.433
|
3280.479
|
2091.206
|
132.681
|
413.090
|
18.205
|
1610.785
|
928.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.237
|
4.425
|
3.713
|
-0.631
|
-3.977
|
-2.472
|
— |
-6.538
|
— | — | — | — |