Hg_chrom5_TN10mRNA_10962
Organism: Heterodera glycines Gene Locus: chr5:11331731-11335876 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.414 | 0.927 | 0.27 | 1.176 | 1.056 | 0.63 | 1.373 | 1.307 | 1.51 | 1.367 | 1.615 | 1.797 | 0.83 | 0.56 | 0.812 | 0.868 | 0.98 | 0.452 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10331
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_14383
|
— |
30-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKLIGTRVGDHRNEQLKKR
|
— | — | — | — | — | — |
0.012
|
— | — |
0.183
|
0.266
|
0.257
|
0.298
|
0.600
|
0.093
|
0.223
|
0.048
|
0.225
|
0.665
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010100
|
1.000
|
1.000
|
Hsc_gene_14383.t1
|
Hsc_gene_14383.t1
|
— |
P18569.1 Ecdysteroid UDP-glucosyltransferase [Autographa californica nucleopolyhedrovirus]
|
KAI1716740.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.890|GO:0009987_0.732|GO:0003674_0.730|GO:0005575_0.702|GO:0110165_0.678|GO:0008152_0.654|GO:0005622_0.628|GO:0016020_0.610|GO:0003824_0.605|GO:0043226_0.583|GO:0005737_0.580|GO:0043229_0.564|GO:0050896_0.558|GO:0016740_0.556|GO:0044237_0.552|GO:0043227_0.532|GO:0016757_0.526|GO:0008194_0.521|GO:0043231_0.516|GO:0016758_0.502|GO:0042221_0.502
|
IPR002213+23-460_256-431+|IPR035595+371-414+|IPR050271+23-448+
|
— |
PF00201+256-431+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+23-448+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-510
|
7es1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
57763.640
|
7.168
|
5.000
|
26.667
|
12.157
|
47.843
|
52.157
|
14.510
|
12.157
|
45.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1288.999
|
6.883
|
563.200
|
958.815
|
243.545
|
38.243
|
24.423
|
27.619
|
4997.694
|
1192.576
|
2823.341
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.127
|
6.984
|
0.875
|
-2.010
|
-2.655
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.