Hg_chrom5_TN10mRNA_10963
Organism: Heterodera glycines Gene Locus: chr5:11340104-11344137 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 0.95 | 0.83 | 0.414 | 1.683 | 1.294 | 0.544 | 1.202 | 2.137 | 0.942 | 1.348 | 1.131 | 2.07 | 0.462 | 1.128 | 0.618 | 0.867 | 0.874 | 0.925 | 1.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — |
0.830
|
0.430
|
0.000
|
— |
0.253
|
0.346
|
0.046
|
0.672
|
0.226
|
0.278
|
0.500
|
0.011
|
0.415
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004226
|
1.000
|
2.000
|
Hsc_gene_14385.t1;Hsc_gene_14385.t2
|
Hsc_gene_14385.t1;Hsc_gene_14385.t2;Hsc_gene_14393.t1
|
— | — |
KAI3413791.1 hypothetical protein GPALN_011272 [Globodera pallida]
|
CAL1161497
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008233
|
— |
IPR008580+295-410_296-408+|IPR042266+273-416+
|
— |
PF05903+295-410+PPPDE_putative_peptidase_domain
|
— |
PTHR12378+296-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
49089.450
|
7.224
|
4.000
|
31.490
|
14.904
|
50.240
|
49.760
|
16.827
|
14.663
|
37.019
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
121.322
|
0.157
|
55.736
|
99.693
|
19.423
|
2.514
|
2.233
|
3.890
|
487.868
|
96.017
|
263.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.280
|
9.210
|
0.948
|
-2.396
|
-2.936
|
— | — | — | — | — | — | — | — |