Hg_chrom5_TN10mRNA_10969
Organism: Heterodera glycines Gene Locus: chr5:11368917-11371292 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.545 | 1.163 | 0.682 | 1.293 | 0.729 | 0.481 | 0.893 | 1.406 | 1.25 | 1.182 | 0.852 | 0.919 | 1.476 | 0.962 | 1.467 | 1.027 | 1.281 | 0.947 | 1.202 | 1.287 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
63-83
|
0.960
|
— |
0.683
|
0.272
|
0.000
|
— |
0.159
|
0.368
|
0.083
|
0.253
|
0.123
|
0.085
|
0.134
|
0.038
|
0.269
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004227
|
1.000
|
2.000
|
Hsc_gene_14395.t1;Hsc_gene_14395.t2
|
Hsc_gene_14395.t1;Hsc_gene_14395.t2
|
— |
Q7PEV7.1 CLIP domain-containing serine protease B4 [Anopheles gambiae]
|
KAI3411059.1 Serine protease [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.773|GO:0005575_0.762|GO:0110165_0.729|GO:0003674_0.628
|
IPR001254+51-305_52-310_58-305+|IPR001314+88-103_167-181_257-269+|IPR009003+38-310+|IPR018114+98-103+|IPR043504+43-310+|IPR051333+30-311+
|
SM00020+51-305+
|
PF00089+58-305+Trypsin
|
— |
PTHR24260+30-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
36253.720
|
9.437
|
19.500
|
23.750
|
14.062
|
45.625
|
54.375
|
15.625
|
8.125
|
50.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
249.324
|
60.535
|
324.469
|
304.635
|
522.794
|
776.029
|
186.838
|
169.693
|
213.330
|
51.424
|
120.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.194
|
2.193
|
— |
0.747
|
0.586
|
-2.046
|
-2.304
|
— | — | — |
3.382
|
— | — |