Hg_chrom5_TN10mRNA_10989
Organism: Heterodera glycines Gene Locus: chr5:11503102-11508839 Feature type: polypeptideProtein Sequence
Length: 720
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 1.453 | 0.859 | 0.239 | 0.949 | 1.033 | 0.612 | 1.944 | 1.451 | 1.276 | 0.905 | 1.389 | 1.08 | 1.095 | 0.907 | 0.972 | 0.842 | 1.052 | 1.068 | 0.98 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10358
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10989
|
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-28
|
0.619
|
0.929
|
0.000
|
0.000
|
0.340
|
0.275
|
0.041
|
0.554
|
0.197
|
0.384
|
0.228
|
0.043
|
0.323
|
0.278
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002266
|
2.000
|
2.000
|
Hsc_gene_14416.t1;Hsc_gene_14417.t1
|
— | — |
A7TZT2.1 Mannosylfructose-phosphate synthase [Agrobacterium fabrum str. C58]
|
WP_183335153.1 glycosyltransferase family 4 protein [Chelatococcus composti];MBB6168832.1 glycosyltransferase involved in cell wall biosynthesis [Chelatococcus composti];MBS7737438.1 glycosyltransferase family 4 protein [Chelatococcus composti];GGG43279.1 glycosyl transferase [Chelatococcus composti]
|
RZU42309
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0008150_0.947|GO:0008152_0.824|GO:0044238_0.803|GO:0009058_0.772|GO:0003674_0.660|GO:0009987_0.653|GO:0003824_0.588|GO:0044237_0.558|GO:0044249_0.529|GO:0005575_0.509
|
IPR001296+531-659+|IPR028098+370-473+|IPR050194+348-710+
|
— |
PF00534+531-659+Glycosyl_transferases_group_1|PF13439+370-473+Glycosyltransferase_Family_4
|
— |
PTHR45947+348-710+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-720
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
81049.650
|
7.744
|
14.000
|
24.722
|
12.500
|
46.944
|
53.056
|
14.306
|
10.417
|
49.028
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
664.734
|
1.665
|
6.585
|
280.159
|
980.261
|
78.920
|
198.305
|
57.180
|
28.845
|
2285.425
|
1318.319
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.751
|
7.242
|
5.523
|
1.776
|
-3.621
|
1.339
|
-0.574
|
1.937
|
-6.438
|
— | — | — | — |