Hg_chrom5_TN10mRNA_10990
Organism: Heterodera glycines Gene Locus: chr5:11510082-11514348 Feature type: polypeptideProtein Sequence
Length: 676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 1.548 | 0.726 | 0.204 | 0.937 | 0.986 | 0.634 | 1.775 | 1.644 | 1.299 | 0.986 | 1.827 | 1.151 | 1.024 | 0.936 | 0.761 | 0.776 | 0.986 | 1.138 | 0.87 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10359
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_10990
|
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.182
|
0.085
|
0.012
|
0.230
|
0.561
|
0.481
|
0.595
|
0.038
|
0.163
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002266
|
2.000
|
2.000
|
Hsc_gene_14416.t1;Hsc_gene_14417.t1
|
Hsc_gene_14417.t1
|
— | — |
KAF7637193.1 Glycos_transf_1 domain-containing protein [Meloidogyne graminicola]
|
WP_072836143
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0008150_0.941|GO:0008152_0.798|GO:0044238_0.779|GO:0009058_0.761|GO:0003674_0.662|GO:0009987_0.629|GO:0003824_0.585|GO:0044237_0.525|GO:0005575_0.509|GO:0110165_0.501
|
IPR001296+483-615+|IPR028098+96-190_324-430+|IPR050194+304-666+
|
— |
PF00534+483-615+Glycosyl_transferases_group_1|PF13439+96-190_324-430+Glycosyltransferase_Family_4
|
— |
PTHR45947+304-666+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-676
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
76173.980
|
9.439
|
22.000
|
24.260
|
12.130
|
44.822
|
55.178
|
14.645
|
9.615
|
47.189
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
551.436
|
1.908
|
4.379
|
10.553
|
38.193
|
3577.929
|
1237.619
|
131.373
|
0.000
|
536.799
|
306.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.329
|
1.373
|
1.826
|
6.561
|
-1.524
|
-4.891
|
3.384
|
-9.871
|
4.257
|
-3.679
|
— | — |
No JSON data available for plots.