Hg_chrom5_TN10mRNA_10993
Organism: Heterodera glycines Gene Locus: chr5:11527451-11535387 Feature type: polypeptideProtein Sequence
Length: 958
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.675 | 1.063 | 0.144 | 0.905 | 2.355 | 0.733 | 0.835 | 0.997 | 1.016 | 1.139 | 4.114 | 1.218 | 0.803 | 0.639 | 1.029 | 0.736 | 0.617 | 0.803 | 1.075 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10362
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
HSP5|AF273732.1#tn22jg15153.t1
|
HSP5|AF2737321#tn22jg15153t1
|
— | — |
Hg_chrom5_TN10mRNA_10993
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKK
|
— | — | — | — |
1-23
|
0.911
|
0.855
|
0.000
|
0.000
|
0.402
|
0.085
|
0.003
|
0.657
|
0.069
|
0.212
|
0.172
|
0.013
|
0.290
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010116
|
1.000
|
1.000
|
Hsc_gene_14419.t1
|
— | — | — |
AAG21335.1 hypothetical esophageal gland cell secretory protein 5, partial [Heterodera glycines]
|
WP_278820718
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-229;894-958
|
1.000
|
230-893
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
109573.480
|
6.720
|
2.000
|
23.591
|
10.752
|
51.670
|
48.330
|
12.317
|
11.273
|
44.990
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
20172.389
|
32.620
|
15873.661
|
13693.600
|
2261.415
|
153.562
|
188.232
|
333.545
|
92254.987
|
6861.723
|
43458.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.700
|
8.577
|
— |
-2.630
|
-3.866
|
— | — | — |
3.632
|
-2.570
|
— | — | — |