Hg_chrom5_TN10mRNA_10994
Organism: Heterodera glycines Gene Locus: chr5:11538844-11544457 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 0.899 | 1.265 | 0.622 | 0.773 | 0.661 | 0.951 | 1.289 | 1.546 | 1.672 | 0.937 | 1.213 | 1.503 | 1.09 | 0.947 | 0.884 | 0.676 | 1.25 | 0.595 | 0.758 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10363
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.867
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.182
|
0.398
|
0.012
|
0.172
|
0.857
|
0.400
|
0.438
|
0.005
|
0.148
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010117
|
1.000
|
1.000
|
Hsc_gene_14420.t1
|
Hsc_gene_14420.t1
|
— |
Q7TP48.2 Adipocyte plasma membrane-associated protein [Rattus norvegicus]
|
KAI1727783.1 strictosidine synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0016844
|
GO:0005575_0.783|GO:0110165_0.783|GO:0016020_0.672|GO:0005622_0.629|GO:0005737_0.607|GO:0008150_0.571|GO:0043226_0.538|GO:0043229_0.529|GO:0071944_0.521|GO:0043227_0.518|GO:0043231_0.512|GO:0005886_0.508
|
IPR011042+48-388+|IPR018119+169-255+
|
— |
PF03088+169-255+Strictosidine_synthase
|
— |
PTHR10426+59-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-388
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
43234.210
|
6.817
|
2.000
|
25.000
|
11.340
|
41.753
|
58.247
|
13.402
|
11.598
|
49.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1971.788
|
9643.229
|
1509.127
|
248.588
|
657.788
|
1781.173
|
846.369
|
1499.873
|
226.985
|
2386.530
|
1461.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.906
|
-5.414
|
-2.493
|
1.373
|
1.451
|
-1.064
|
— |
-0.681
|
-3.532
|
— | — | — | — |
No JSON data available for plots.