Hg_chrom5_TN10mRNA_10996
Organism: Heterodera glycines Gene Locus: chr5:11566267-11575524 Feature type: polypeptideProtein Sequence
Length: 793
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 1.026 | 1.055 | 0.609 | 0.567 | 1.229 | 0.961 | 1.198 | 1.121 | 0.954 | 0.382 | 1.113 | 1.366 | 1.091 | 1.39 | 1.441 | 0.765 | 1.185 | 0.873 | 0.89 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10365
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.749
|
0.756
|
1.000
|
1.000
|
0.250
|
0.036
|
0.021
|
0.218
|
0.318
|
0.485
|
0.315
|
0.038
|
0.587
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010119
|
1.000
|
1.000
|
Hsc_gene_14423.t1
|
Hsc_gene_14423.t1;Hsc_gene_14423.t2
|
— |
Q17330.2 Semaphorin-1A [Caenorhabditis elegans]
|
KAI1700872.1 sema domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0030215
|
GO:0008150_0.901|GO:0009987_0.717|GO:0032502_0.712|GO:0048856_0.712|GO:0032501_0.701|GO:0005575_0.689|GO:0110165_0.689|GO:0007275_0.665|GO:0048731_0.653|GO:0003674_0.547|GO:0065007_0.541|GO:0007399_0.526|GO:0050789_0.524
|
IPR001627+35-512_58-482_311-470+|IPR002165+514-547+|IPR015943+36-513+|IPR016201+514-565+|IPR027231+15-567+|IPR036352+45-474+
|
SM00423+514-565+|SM00630+58-482+
|
PF01403+311-470+Sema_domain|PF01437+514-547+Plexin_repeat
|
G3DSA:3.30.1680.10:FF:000016+515-569+Putative_Semaphorin-6B
|
PTHR11036+15-567+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-793
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
86650.640
|
7.629
|
10.500
|
20.933
|
11.475
|
44.893
|
55.107
|
11.728
|
9.206
|
56.999
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
584.284
|
504.932
|
754.639
|
350.230
|
224.966
|
361.199
|
421.026
|
959.926
|
28.706
|
1193.369
|
694.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.352
|
-0.665
|
-1.000
|
-0.671
|
0.698
|
— |
1.305
|
-1.048
|
-5.502
|
3.805
|
— | — | — |