Hg_chrom5_TN10mRNA_10998
Organism: Heterodera glycines Gene Locus: chr5:11576303-11588486 Feature type: polypeptideProtein Sequence
Length: 1,494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 2.288 | 0.961 | 0.3 | 1.205 | 1.184 | 0.622 | 1.138 | 1.398 | 1.14 | 1.765 | 1.102 | 0.744 | 1.133 | 0.929 | 1.061 | 0.669 | 0.619 | 0.927 | 0.63 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRRK,RKSK,SSRKR,EKTKKVDKPHKK,RRIGSIIIGGPDVKKRVRF,KRMDSVIRHVNKARKFLKK,KKHDVQLRPVVDTSRKGRN
|
— | — | — | — | — |
0.789
|
0.470
|
0.000
|
— |
0.252
|
0.143
|
0.013
|
0.663
|
0.057
|
0.118
|
0.083
|
0.023
|
0.501
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001342
|
3.000
|
2.000
|
Hsc_gene_14424.t1;Hsc_gene_14424.t2
|
— | — | — | — |
MDE0555045
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
551-625;685-962;1130-1494
|
3.000
|
1-550;626-684;963-1129
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.936
|
170121.020
|
10.047
|
72.000
|
30.991
|
8.300
|
56.961
|
43.039
|
18.474
|
12.517
|
47.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
1396.355
|
21.426
|
141.461
|
260.830
|
182.505
|
11.027
|
10.545
|
28.356
|
616.053
|
5400.955
|
3350.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.493
|
3.466
|
0.990
|
-0.545
|
-4.035
|
— |
1.257
|
-1.285
|
-3.247
|
— |
-4.421
|
— | — |