Hg_chrom5_TN10mRNA_11007
Organism: Heterodera glycines Gene Locus: chr5:11628680-11636389 Feature type: polypeptideProtein Sequence
Length: 539
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 2.028 | 1.181 | 0.832 | 0.866 | 1.475 | 0.685 | 1.206 | 1.525 | 1.028 | 1.04 | 1.964 | 0.979 | 1.249 | 0.53 | 0.901 | 0.852 | 0.9 | 0.428 | 0.655 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10375
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_9683
|
— |
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
golgi_apparatus
|
nucleus
|
DLGKNSKHPHKKESATKKPHRKLGVESKVKVEQKRKSKNLSEKKGRF
|
— | — | — | — |
1-25
|
0.977
|
0.997
|
0.000
|
0.000
|
0.225
|
0.089
|
0.030
|
0.322
|
0.356
|
0.345
|
0.484
|
0.017
|
0.323
|
0.328
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004229
|
1.000
|
2.000
|
Hsc_gene_14428.t1;Hsc_gene_9684.t1
|
Hsc_gene_14428.t1;Hsc_gene_9683.t1;Hsc_gene_9684.t1
|
— | — |
XP_022981306.1 thaumatin-like protein 1 [Cucurbita maxima]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.958|GO:0005575_0.638|GO:0050896_0.637|GO:0110165_0.634|GO:0005622_0.556|GO:0016020_0.546|GO:0043226_0.505|GO:0043229_0.505
|
IPR001938+272-524_274-525_278-453_312-527+|IPR037176+272-524_274-525+
|
SM00205+274-525+
|
PF00314+278-453+Thaumatin_family
|
— |
PTHR31048+272-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-109
|
1.000
|
110-539
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
59884.970
|
5.766
|
-5.500
|
23.562
|
8.720
|
49.536
|
50.464
|
11.874
|
11.688
|
53.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
salmon
|
607.250
|
146.070
|
987.523
|
710.318
|
110.214
|
24.592
|
15.210
|
102.433
|
1888.772
|
454.002
|
1068.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.530
|
2.144
|
-0.368
|
-2.720
|
-2.149
|
-0.686
|
1.957
|
-2.613
|
— | — | — |
12.531
|
— |